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16S rRNA gene sequences collected Gulf of Mexico sediments before and after the Deepwater Horizon oil spill, May 2010-July 2011

Ecosystem Impacts of Oil and Gas Inputs to the Gulf-2 (ECOGIG-2)

DOI:
10.7266/N7RF5S21
 
UDI:
R4.x268.000:0040
Last Update:
Feb 22 2017 20:10 UTC
 
Dataset Author(s):
Andreas Teske
Point of Contact:
Teske, Andreas P.
University of North Carolina at Chapel Hill / Department of Marine Sciences
3202 Venable Hall, CB 3300
Chapel Hill, North Carolina  27599
USA
teske@email.unc.edu
Funding Source:
RFP-IV
Data Collection Period:
2010-05-05 to 2011-07-21

Identified Submitted Review Available
3 3 3 3

Abstract:

16S rRNA gene sequencing was used to identify the sediment microbial community response to the Deepwater Horizon oil spill. Sediments were collected before, during and after the oil spill and 16S rRNA gene sequences were acquired via Sanger DNA sequencing. Samples were collected between May 2010-July 2011.

Purpose:

The purpose of this study was to investigate the diversity of the microbial community response to the Deepwater Horizon spill via sequencing the 16S rRNA gene from sediments collected before and after the spill.

Theme Keywords:

16S rRNA gene sequencing, Deepwater Horizon spill

File Format:

csv

Dataset Downloads:

2

16S rRNA gene sequences collected Gulf of Mexico sediments before and after the Deepwater Horizon oil spill, May 2010-July 2011



Identification Information
Distribution Information
Metadata Maintenance Information

Metadata: 
  File identifier: 
      R4.x268.000-0040-metadata.xml
  Language: 
      eng; USA
  Character set: 
    Character set code: 
      utf8
  Hierarchy level: 
    Scope code: 
      dataset
  Metadata author: 
    Responsible party: 
      Individual name: 
          Matthew Saxton
      Organisation name: 
          Miami University
      Position name: 
          ECOGIG Managing Director
      Contact info: 
        Contact: 
          Phone: 
            Telephone: 
              Voice: 
                  5132174114
              Facsimile: 
          Address: 
            Address: 
              Delivery point: 
                  116 Levey Hall
                  4200 N University Blvd
              City: 
                  Middletown
              Administrative area: 
                  Ohio
              Postal code: 
                  445042
              Country: 
                  USA
              Electronic mail address: 
                  matt.saxton@gmail.com
      Role: 
        Role code: 
          pointOfContact
  Date stamp: 
      2018-08-11T13:36:20+00:00
  Metadata standard name: 
      ISO 19115-2 Geographic Information - Metadata - Part 2: Extensions for Imagery and Gridded Data
  Metadata standard version: 
      ISO 19115-2:2009(E)
  Dataset URI: 
      https://data.gulfresearchinitiative.org/metadata/R4.x268.000:0040
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Identification info: Data identification: Citation: Citation: Title: 16S rRNA gene sequences collected Gulf of Mexico sediments before and after the Deepwater Horizon oil spill, May 2010-July 2011 Alternate title: Date: Date: Date: 2017-02-22 Date type: Date type code: publication Abstract: 16S rRNA gene sequencing was used to identify the sediment microbial community response to the Deepwater Horizon oil spill. Sediments were collected before, during and after the oil spill and 16S rRNA gene sequences were acquired via Sanger DNA sequencing. Samples were collected between May 2010-July 2011. Purpose: The purpose of this study was to investigate the diversity of the microbial community response to the Deepwater Horizon spill via sequencing the 16S rRNA gene from sediments collected before and after the spill. Status: Progress code: completed Point of contact: Responsible party: Individual name: Andreas P. Teske Organisation name: University of North Carolina at Chapel Hill / Department of Marine Sciences Position name: Professor Contact info: Contact: Phone: Telephone: Voice: 9198432463 Facsimile: Address: Address: Delivery point: 3202 Venable Hall, CB 3300 City: Chapel Hill Administrative area: North Carolina Postal code: 27599 Country: USA Electronic mail address: teske@email.unc.edu Role: Role code: principalInvestigator Descriptive keywords: Keywords: Keyword: 16S rRNA gene sequencing Keyword: Deepwater Horizon spill Type: Keyword type code: theme Descriptive keywords: Keywords: Keyword: Gulf of Mexico Type: Keyword type code: place Language: eng; USA Topic category: Topic category code: biota Topic category: Topic category code: environment Topic category: Topic category code: oceans Extent: Extent: Geographic element: Geographic bounding box: West bound longitude: -91.82605 East bound longitude: -88.167 South bound latitude: 27.90617 North bound latitude: 28.78803 Geographic element: BoundingPolygon: Polygon: gml:MultiPoint: gml:pointMember: Point: gml:pos: 28.77595 -88.40488 gml:pointMember: Point: gml:pos: 28.7025 -88.36215 gml:pointMember: Point: gml:pos: 28.78803 -88.167 gml:pointMember: Point: gml:pos: 28.71083 -88.74833 gml:pointMember: Point: gml:pos: 28.54917 -88.67933 gml:pointMember: Point: gml:pos: 28.77058 -88.38123 gml:pointMember: Point: gml:pos: 28.72305 -88.40962 gml:pointMember: Point: gml:pos: 27.90617 -88.45002 gml:pointMember: Point: gml:pos: 28.7225 -88.36283 gml:pointMember: Point: gml:pos: 28.48817 -88.3175 gml:pointMember: Point: gml:pos: 28.70637 -88.36358 gml:pointMember: Point: gml:pos: 28.70818 -88.36665 gml:pointMember: Point: gml:pos: 28.34865 -91.82605 Temporal element: Temporal extent: Extent: Time period: Description: ground condition Begin date: 2010-05-05 End date: 2011-07-21 Supplemental Information: Sample name; Ship; Date (mm/dd/yy); Site depth (m); latitude (decimal degrees); longitude (decimal degrees); Oil impact; Sample layer (sediment sampling range, cm); NCBI Genbank Accession #|||||All 16S rRNA gene sequences associated with this dataset are deposited with the NCBI Genbank. Specifically, C40 are KX172179–KX172328; sample C75, KX172329–KX172396; sample C82, KX172397–KX172514; sample E01402, KX172515–KX172558; sample E01801, KX172559–KX172596; sample E01804, KX172597–KX172667; sample GIP08, KX172668–KX172718; sample GIP08RNA, KX172719–KX172771; sample GIP16-0-1 cm, KX172772–KX172892; sample GIP16-3-4 cm, KX172893–KX172944; sample GIP16RNA, KX172945–KX172993; sample GIP24, KX172994–KX173048; sample MUC19, KX173049–KX173105; sample MUC20, KX173106–KX173165, sample PE6, KX173166–KX173236; sample PE21, KX173237–KX173285.
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Distribution info: Distribution: Distributor: Distributor: Distributor contact: Responsible party: Organisation name: Gulf of Mexico Research Initiative Information and Data Cooperative (GRIIDC) Contact info: Contact: Phone: Telephone: Voice: 3618253604 Address: Address: Delivery point: 6300 Ocean Drive City: Corpus Christi Administrative area: TX Postal code: 78412 Country: USA Electronic mail address: griidc@gomri.org Online Resource: Online Resource: Linkage: URL: https://data.gulfresearchinitiative.org Role: Role code: distributor Distributor format: Format: Name: csv Version: inapplicable File decompression technique: Distributor transfer options: Digital transfer options: Transfer size: 0.0017 Online: Online Resource: Linkage: URL: https://data.gulfresearchinitiative.org/data/R4.x268.000:0040 Protocol: https
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Metadata maintenance: Maintenance information: Maintenance and update frequency: unknown Maintenance note: This ISO metadata record was automatically generated from information provided to GRIIDC for dataset: R4.x268.000:0040 on 2018-12-13T15:09:35+00:00
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