Raw and processed negative electrospray ionization coupled to Fourier transform ion cyclotron resonance mass spectrometry (ESI-FTICR-MS) data for mesocosm experiment samples collected from bulk DOM tank, control tank marine snow, and WAF tank marine snow.

Aggregation and Degradation of Dispersants and Oil by Microbial Exopolymers (ADDOMEx)

DOI:
10.7266/N72805NC
 
UDI:
R4.x263.189:0007
Last Update:
Oct 27 2016 19:51 UTC
 
Dataset Author(s):
Obeid, Wassim; Hatcher, Pat
Point of Contact:
Schwehr, Kathleen (Kathy)
Texas A&M University at Galveston / Marine Sciences Department
P.O. Box 1675
Galveston, Texas  77553
USA
schwehrk@tamug.edu
Funding Source:
RFP-IV
 
Extent Description:
Dataset contains laboratory combinatorial chemistry of marine snow, no field sampling involved.

Identified Submitted In-Review Available
3 3 3 3

Suggested Citation:

Obeid, Wassim; Hatcher, Pat. 2016. Raw and processed negative electrospray ionization coupled to Fourier transform ion cyclotron resonance mass spectrometry (ESI-FTICR-MS) data for mesocosm experiment samples collected from bulk DOM tank, control tank marine snow, and WAF tank marine snow.. Distributed by: Gulf of Mexico Research Initiative Information and Data Cooperative (GRIIDC), Harte Research Institute, Texas A&M University–Corpus Christi. doi:10.7266/N72805NC

Abstract:

Mesocosm experiments were performed as part of the ADDOMEx GOMRI funded program with seawater collected from the Northern Gulf of Mexico (NGOM) and “seeded” with microbial populations collected from coastal Texas (in Galveston Bay). Of the treatments, negative electrospray ionization mass spectrometry coupled to Fourier transform ion cyclotron resonance mass spectrometry (ESI-FTICR-MS) spectra were collected for (A) pyridine extract of marine snow collected from control mesocosm tank (B) pyridine extract of marine snow collected from WAF mesocosm tank and (C) bulk DOM (dissolved organic matter) from control mesocosm tank. The data contained in this dataset represents the raw m/z and intensity data obtained directly from the instrument and the processed Excel files used for the analysis. This data was used to create the figures in the original manuscript.

Purpose:

To investigate molecular level differences between marine snow extracts from a control tank and a WAF tank.

Theme Keywords:

Corexit, WAF, mesocosm, ESI FTICR-MS, water accommodated fraction, DOM, marine snow

File Format:

xls, txt

Filename:

Dataset Hatcher.zip (288.43 KB)

Dataset Downloads:

9

Raw and processed negative electrospray ionization coupled to Fourier transform ion cyclotron resonance mass spectrometry (ESI-FTICR-MS) data for mesocosm experiment samples collected from bulk DOM tank, control tank marine snow, and WAF tank marine snow.



Identification Information
Distribution Information
Metadata Maintenance Information

Metadata: 
  File identifier: 
      R4.x263.189-0007-metadata.xml
  Language: 
      eng; USA
  Character set: 
    Character set code: 
      utf8
  Hierarchy level: 
    Scope code: 
      dataset
  Metadata author: 
    Responsible party: 
      Individual name: 
          Wassim Obeid
      Organisation name: 
          Old Dominion University / Department of Chemistry and Biochemistry
      Position name: 
      Contact info: 
        Contact: 
          Phone: 
            Telephone: 
              Voice: 
              Facsimile: 
          Address: 
            Address: 
              Delivery point: 
                  Old Dominion University
                  110 Alfriend Chemistry Building
              City: 
                  Norfolk
              Administrative area: 
                  VA
              Postal code: 
                  23529
              Country: 
                  USA
              Electronic mail address: 
                  wobeid@odu.edu
      Role: 
        Role code: 
          pointOfContact
  Date stamp: 
      2021-05-04T20:04:56+00:00
  Metadata standard name: 
      ISO 19115-2 Geographic Information - Metadata - Part 2: Extensions for Imagery and Gridded Data
  Metadata standard version: 
      ISO 19115-2:2009(E)
  Dataset URI: 
      https://data.gulfresearchinitiative.org/metadata/R4.x263.189:0007
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Identification info: Data identification: Citation: Citation: Title: Raw and processed negative electrospray ionization coupled to Fourier transform ion cyclotron resonance mass spectrometry (ESI-FTICR-MS) data for mesocosm experiment samples collected from bulk DOM tank, control tank marine snow, and WAF tank marine snow. Alternate title: ESI-FTICR-MS data for DOM, control marine snow, and WAF marine snow Date: Date: Date: 2016-10-21 Date type: Date type code: publication Identifier: Identifier: Code: Anchor: xlink: https://dx.doi.org/10.7266/N72805NC title: DOI doi:10.7266/N72805NC Abstract: Mesocosm experiments were performed as part of the ADDOMEx GOMRI funded program with seawater collected from the Northern Gulf of Mexico (NGOM) and “seeded” with microbial populations collected from coastal Texas (in Galveston Bay). Of the treatments, negative electrospray ionization mass spectrometry coupled to Fourier transform ion cyclotron resonance mass spectrometry (ESI-FTICR-MS) spectra were collected for (A) pyridine extract of marine snow collected from control mesocosm tank (B) pyridine extract of marine snow collected from WAF mesocosm tank and (C) bulk DOM (dissolved organic matter) from control mesocosm tank. The data contained in this dataset represents the raw m/z and intensity data obtained directly from the instrument and the processed Excel files used for the analysis. This data was used to create the figures in the original manuscript. Purpose: To investigate molecular level differences between marine snow extracts from a control tank and a WAF tank. Status: Progress code: completed Point of contact: Responsible party: Individual name: Kathleen (Kathy) Schwehr Organisation name: Texas A&M University at Galveston / Marine Sciences Department Position name: Associate Research Scientist Contact info: Contact: Phone: Telephone: Voice: 4097404452 Facsimile: Address: Address: Delivery point: P.O. Box 1675 City: Galveston Administrative area: Texas Postal code: 77553 Country: USA Electronic mail address: schwehrk@tamug.edu Role: Role code: pointOfContact Point of contact: Responsible party: Individual name: Wassim Obeid Organisation name: Old Dominion University / Department of Chemistry and Biochemistry Position name: Contact info: Contact: Phone: Telephone: Voice: Facsimile: Address: Address: Delivery point: Old Dominion University 110 Alfriend Chemistry Building City: Norfolk Administrative area: VA Postal code: 23529 Country: USA Electronic mail address: wobeid@odu.edu Role: Role code: pointOfContact Descriptive keywords: Keywords: Keyword: Corexit Keyword: WAF Keyword: mesocosm Keyword: ESI FTICR-MS Keyword: water accommodated fraction Keyword: DOM Keyword: marine snow Type: Keyword type code: theme Descriptive keywords: Keywords: Keyword: inapplicable Type: Keyword type code: place Resource constraints: title: Cite As Constraints: Use limitation: Obeid, Wassim; Hatcher, Pat. 2016. Raw and processed negative electrospray ionization coupled to Fourier transform ion cyclotron resonance mass spectrometry (ESI-FTICR-MS) data for mesocosm experiment samples collected from bulk DOM tank, control tank marine snow, and WAF tank marine snow.. Distributed by: Gulf of Mexico Research Initiative Information and Data Cooperative (GRIIDC), Harte Research Institute, Texas A&M University–Corpus Christi. doi:10.7266/N72805NC Resource constraints: title: CC0 License Legal constraints: Use constraints: Restriction code: licenceUnrestricted Other constraints: This information is released under the Creative Commons license - No Rights Reserved - CC0 1.0 Universal (https://creativecommons.org/publicdomain/zero/1.0/). The person who associated a work with this deed has dedicated the work to the public domain by waiving all of his or her rights to the work worldwide under copyright law, including all related and neighboring rights, to the extent allowed by law. You can copy, modify, distribute and perform the work, even for commercial purposes, all without asking permission. Resource constraints: title: Liability and Warranty Legal constraints: Other constraints: All materials on this website are made available to GRIIDC and in turn to you "as-is." Content may only be submitted by an individual who represents and warrants that s/he has sufficient rights to be able to make the content available under a CC0 waiver. There is no warranty (expressed or implied) to these materials, their title, accuracy, non-infringement of third party rights, or fitness for any particular purpose, including the performance or results you may obtain from their use. Use these materials at your own risk. Under no circumstances shall GRIIDC be liable for any direct, incidental, special, consequential, indirect, or punitive damages that result from the use or the inability to use either this website or the materials available via this website. If you are dissatisfied with any website feature, content, or terms of use, your sole and exclusive remedy is to discontinue use. Aggregation Info: AggregateInformation: Aggregate Data Set Name: title: Related Publication Citation Citation: Title: Quigg, A., Passow, U., Chin, W.-C., Xu, C., Doyle, S., Bretherton, L., … Santschi, P. H. (2016). The role of microbial exopolymers in determining the fate of oil and chemical dispersants in the ocean. Limnology and Oceanography Letters. doi:10.1002/lol2.10030 Date: inapplicable Aggregate Data Set Identifier: title: Related Publication DOI Identifier: Code: Anchor: xlink: https://dx.doi.org/10.1002/lol2.10030 title: DOI doi:10.1002/lol2.10030 Association Type: Association type code: crossReference Language: eng; USA Topic category: Topic category code: biota Topic category: Topic category code: environment Topic category: Topic category code: oceans Extent: Extent: Description: Dataset contains laboratory combinatorial chemistry of marine snow, no field sampling involved. Supplemental Information: for the text files: mass lists of m/z values (m= mass; z=charge of the ion) and their peak intensities (arbitrary units) for the cvs files: type indicates the chemical molecular formula; m/z is the mass to ionic charge ratio; PeakInt is peak intensity in arbitrary units; C= carbon abundance; H-1 =proton abundance; H= hydrogen abundance; N=nitrogen abundance; O=oxygen abundance; S=sulfur abundance; P=phosphorus abundance; exact mass =molucular weight |Mesocosm methods – COASTal water with coastal microbial concentrate, COAST. Twelve 100L mesocosm tanks were filled with Gulf of Mexico seawater collected 5 miles off shore from Galveston (TX) that had been pre-treated with a charcoal filter to remove large particles and debris. Plankton (<63 µm) were collected using a net and transferred into polycarbonate bottles. This concentrated plankton mass was introduced to the tanks (2 L to each final volume 83 L) immediately prior to starting the experiments. Four treatments were prepared in triplicate. Control tanks were filled with seawater and plankton mixture. Water accommodated fraction (WAF) of oil was prepared by mixing 25 mL (5 ml ~ every 30 min for 2.5 hrs) of Macondo surrogate oil into 130 L of seawater then mixing for 12 to 24 hrs. (Knap et al. 1986; Knap et al. 2016 in preparation). The WAF was then introduced into the WAF mesocosm tanks and filled to 87 L and mixed. From these WAF tanks 6 L was removed for other experiments and analyses (2L for roller tables, 2 L dark/light, 4 L hydrocarbon analyses). In order to make chemically enhanced water accommodated fraction (CEWAF), Corexit was mixed with oil in a ratio of 1:20 and 25 mL of this mixture (5 ml every 30 min for 2.5 hrs) of surrogate oil plus Corexit was added to 130 L of seawater which was mixed for 8 to 24 hrs prior to being loaded into the mesocosm tanks. The CEWAF was then introduced into the CEWAF mesocosm tanks and filled to 96 L and mixed. From these CEWAF tanks 15 L was removed for other experiments and analyses (9 L for the DCEWAF mesocosms, 2L for roller tables, 2 L dark/light, 4 L hydrocarbon analyses). Diluted CEWAF (DCEWAF) was prepared by mixing 9 L of CEWAF with 78 L of the original seawater for a total volume of 87 L. From these DCEWAF tanks 6 L was removed for other experiments and analyses (2L for roller tables, 2 L dark/light, 4 L hydrocarbon analyses). The estimated oil equivalents (EOE) were determined using Macondo surrogate oil as the calibration standard (Wade et al. 2011) for the fluorescence analyses (Horiba Scientific Aqualog Fluorometer). The EOE mean concentration of the three mesocosms for the control, WAF, DCEWAF and CEWAF at the start of the experiments were 0 mg/L, 0.26 mg/L, 2.74 mg/L and 41.5 mg/L, respectively. The EOE mean concentration of the three mesocosms for the in the control, WAF, DCEWAF and CEWAF after 72 hours were 0 mg/L , 0.06 mg/L, 1.03. and 17.3 mg/L, respectively. Knap, A. H., T. D. Sleeter, R. E. Dodge, S. C. Wyers, H. R. Frith, and S. R. Smith. 1983. The effects of oil spills and dispersants use on corals: A review and multidisciplinary experimental approach. Oil and Petrochemical Pollution 1: 157–169. Wade, T.L., Sweet S.T., Sericano, J.L., N.L. Guinasso Jr., Diercks, A.-R., Highsmith, R.C., Asper, V.L., Joung, D., Shiller, A.M., Lohrenz, S.E. and Joye, S.B. 2011, Analyses of Water Samples from the Deepwater Horizon Oil Spill: Documentation of the Sub-Surface Plume. in Monitoring and Modeling the Deepwater Horizon Oil Spill: A Record-Breaking Enterprise, Geophysical Monograph Series, vol. 195, edited by Y. Liu et al., pp. 77–82, AGU, Washington, D. C., doi:10.1029/2011GM001103 |Apollo II ESI ion source coupled to a Bruker Daltonics 12 Tesla Apex Qe ESI FTICR-MS |||
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Distribution info: Distribution: Distributor: Distributor: Distributor contact: Responsible party: Organisation name: Gulf of Mexico Research Initiative Information and Data Cooperative (GRIIDC) Contact info: Contact: Phone: Telephone: Voice: 3618253604 Address: Address: Delivery point: 6300 Ocean Drive City: Corpus Christi Administrative area: TX Postal code: 78412 Country: USA Electronic mail address: griidc@gomri.org Online Resource: Online Resource: Linkage: URL: https://data.gulfresearchinitiative.org Role: Role code: distributor Distributor format: Format: Name: xls, txt Version: inapplicable File decompression technique: zip Distributor transfer options: Digital transfer options: Transfer size: 0.2884 Online: Online Resource: Linkage: URL: https://data.gulfresearchinitiative.org/data/R4.x263.189:0007 Protocol: https Name: Data Landing Page Description: GRIIDC dataset landing page Function: Online function code: information
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Metadata maintenance: Maintenance information: Maintenance and update frequency: unknown Maintenance note: This ISO metadata record was automatically generated from information provided to GRIIDC for dataset: R4.x263.189:0007 on 2021-09-23T19:36:06-05:00
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