Changes in bacterial community composition during the biodegradation of crude oil as affected by temperature, nutrients and initial bacterial community in deep and surface waters of the northern Gulf of Mexico

Dispersion Research on Oil: Physics and Plankton Studies II (DROPPS II)

DOI:
10.7266/N7VT1Q3V
 
UDI:
R4.x259.191:0019
Last Update:
Jul 05 2016 16:26 UTC
 
Dataset Author(s):
Hernando Bacosa
Point of Contact:
Bacosa, Hernando
Texas A&M University at Galveston / Marine Biology Department
200 Seawolf Pkwy Bldg 3029 Rm 210
Galveston, Texas  77554
USA
herbacs3001@gmail.com
Funding Source:
RFP-IV
 
Extent Description:
Dataset is the result of laboratory incubation experiment, no field sampling involved.

Identified Submitted In-Review Available
3 3 3 3

Suggested Citation:

Hernando Bacosa. 2016. Changes in bacterial community composition during the biodegradation of crude oil as affected by temperature, nutrients and initial bacterial community in deep and surface waters of the northern Gulf of Mexico. Distributed by: Gulf of Mexico Research Initiative Information and Data Cooperative (GRIIDC), Harte Research Institute, Texas A&M University–Corpus Christi. doi:10.7266/N7VT1Q3V

Abstract:

We sampled surface and deep-sea waters near the DWH site, amended with oil and incubated under different temperature, nutrients, and initial microbial community. The data here is the bacterial community percent composition of samples at different time (0, 5, 12 and 50 days) of incubation.

Purpose:

This study aims to elucidate how the temperature, nutrient concentration, and initial microbiota affect the composition of bacterial community during the biodegradation of oil

Theme Keywords:

temperature, nutrient, bacteria, Deepwater Horizon

File Format:

xlsx

Filename:

Bacterial data.xlsx (33.9 KB)

Dataset Downloads:

3

Changes in bacterial community composition during the biodegradation of crude oil as affected by temperature, nutrients and initial bacterial community in deep and surface waters of the northern Gulf of Mexico



Identification Information
Distribution Information
Metadata Maintenance Information

Metadata: 
  File identifier: 
      R4.x259.191-0019-metadata.xml
  Language: 
      eng; USA
  Character set: 
    Character set code: 
      utf8
  Hierarchy level: 
    Scope code: 
      dataset
  Metadata author: 
    Responsible party: 
      Individual name: 
          Zhanfei Liu
      Organisation name: 
          The University of Texas at Austin / Department of Marine Science
      Position name: 
          Associate Professor
      Contact info: 
        Contact: 
          Phone: 
            Telephone: 
              Voice: 
                  3617496772
              Facsimile: 
          Address: 
            Address: 
              Delivery point: 
                  Marine Science Institute
                  750 Channel View Dr
              City: 
                  Port Aransas
              Administrative area: 
                  Texas
              Postal code: 
                  78373
              Country: 
                  USA
              Electronic mail address: 
                  zhanfei.liu@utexas.edu
      Role: 
        Role code: 
          pointOfContact
  Date stamp: 
      2018-08-11T13:35:20+00:00
  Metadata standard name: 
      ISO 19115-2 Geographic Information - Metadata - Part 2: Extensions for Imagery and Gridded Data
  Metadata standard version: 
      ISO 19115-2:2009(E)
  Dataset URI: 
      https://data.gulfresearchinitiative.org/metadata/R4.x259.191:0019
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Identification info: Data identification: Citation: Citation: Title: Changes in bacterial community composition during the biodegradation of crude oil as affected by temperature, nutrients and initial bacterial community in deep and surface waters of the northern Gulf of Mexico Alternate title: Bacterial community as affected by oil and environmental factors Date: Date: Date: 2016-07-15 Date type: Date type code: publication Identifier: Identifier: Code: Anchor: xlink: https://dx.doi.org/10.7266/N7VT1Q3V title: DOI doi:10.7266/N7VT1Q3V Abstract: We sampled surface and deep-sea waters near the DWH site, amended with oil and incubated under different temperature, nutrients, and initial microbial community. The data here is the bacterial community percent composition of samples at different time (0, 5, 12 and 50 days) of incubation. Purpose: This study aims to elucidate how the temperature, nutrient concentration, and initial microbiota affect the composition of bacterial community during the biodegradation of oil Status: Progress code: completed Point of contact: Responsible party: Individual name: Hernando Bacosa Organisation name: Texas A&M University at Galveston / Marine Biology Department Position name: Postdoctoral Fellow Contact info: Contact: Phone: Telephone: Voice: 4097417168 Facsimile: Address: Address: Delivery point: 200 Seawolf Pkwy Bldg 3029 Rm 210 City: Galveston Administrative area: Texas Postal code: 77554 Country: USA Electronic mail address: herbacs3001@gmail.com Role: Role code: pointOfContact Point of contact: Responsible party: Individual name: Zhanfei Liu Organisation name: The University of Texas at Austin / Department of Marine Science Position name: Associate Professor Contact info: Contact: Phone: Telephone: Voice: 3617496772 Facsimile: Address: Address: Delivery point: Marine Science Institute 750 Channel View Dr City: Port Aransas Administrative area: Texas Postal code: 78373 Country: USA Electronic mail address: zhanfei.liu@utexas.edu Role: Role code: principalInvestigator Descriptive keywords: Keywords: Keyword: temperature Keyword: nutrient Keyword: bacteria Keyword: Deepwater Horizon Type: Keyword type code: theme Descriptive keywords: Keywords: Keyword: Gulf of Mexico Type: Keyword type code: place Resource constraints: title: Cite As Constraints: Use limitation: Hernando Bacosa. 2016. Changes in bacterial community composition during the biodegradation of crude oil as affected by temperature, nutrients and initial bacterial community in deep and surface waters of the northern Gulf of Mexico. Distributed by: Gulf of Mexico Research Initiative Information and Data Cooperative (GRIIDC), Harte Research Institute, Texas A&M University–Corpus Christi. doi:10.7266/N7VT1Q3V Resource constraints: title: CC0 License Legal constraints: Use constraints: Restriction code: licenceUnrestricted Other constraints: This information is released under the Creative Commons license - No Rights Reserved - CC0 1.0 Universal (https://creativecommons.org/publicdomain/zero/1.0/). The person who associated a work with this deed has dedicated the work to the public domain by waiving all of his or her rights to the work worldwide under copyright law, including all related and neighboring rights, to the extent allowed by law. You can copy, modify, distribute and perform the work, even for commercial purposes, all without asking permission. Resource constraints: title: Liability and Warranty Legal constraints: Other constraints: All materials on this website are made available to GRIIDC and in turn to you "as-is." Content may only be submitted by an individual who represents and warrants that s/he has sufficient rights to be able to make the content available under a CC0 waiver. There is no warranty (expressed or implied) to these materials, their title, accuracy, non-infringement of third party rights, or fitness for any particular purpose, including the performance or results you may obtain from their use. Use these materials at your own risk. Under no circumstances shall GRIIDC be liable for any direct, incidental, special, consequential, indirect, or punitive damages that result from the use or the inability to use either this website or the materials available via this website. If you are dissatisfied with any website feature, content, or terms of use, your sole and exclusive remedy is to discontinue use. Aggregation Info: AggregateInformation: Aggregate Data Set Name: title: Related Publication Citation Citation: Title: Liu, J., Bacosa, H. P., & Liu, Z. (2017). Potential Environmental Factors Affecting Oil-Degrading Bacterial Populations in Deep and Surface Waters of the Northern Gulf of Mexico. Frontiers in Microbiology, 7. doi:10.3389/fmicb.2016.02131 Date: inapplicable Aggregate Data Set Identifier: title: Related Publication DOI Identifier: Code: Anchor: xlink: https://dx.doi.org/10.3389/fmicb.2016.02131 title: DOI doi:10.3389/fmicb.2016.02131 Association Type: Association type code: crossReference Language: eng; USA Topic category: Topic category code: biota Topic category: Topic category code: environment Topic category: Topic category code: oceans Extent: Extent: Description: Dataset is the result of laboratory incubation experiment, no field sampling involved. Supplemental Information: Percent composition of bacteria at class level and genus level. BI: Bottom inoculant, SI: Surface inoculant, BW: Bottom water (deep water), SW: Surface water. |Water from two depths- 2 m (SI) and 1537 m (BI) was used for the incubation experiments. 20 mL of filtered surface water (SW) or filtered bottom water (BW) was transferred into a series of 30 mL pre-combusted amber bottles using a sterilized graduated cylinder, and then the bottles were inoculated with either 2.5 mL unfiltered bottom water (BI) or 2.5 mL unfiltered surface water (SI) as inoculums. Incubation was done at 4C or 24C for 50 days. Crude oil was added to each bottle using a Hamilton microliter syringe made of glass and stainless steel, at a final concentration of ca. 200 mg/L. The residual oil was extracted and analyzed by GC-MS||||
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Distribution info: Distribution: Distributor: Distributor: Distributor contact: Responsible party: Organisation name: Gulf of Mexico Research Initiative Information and Data Cooperative (GRIIDC) Contact info: Contact: Phone: Telephone: Voice: 3618253604 Address: Address: Delivery point: 6300 Ocean Drive City: Corpus Christi Administrative area: TX Postal code: 78412 Country: USA Electronic mail address: griidc@gomri.org Online Resource: Online Resource: Linkage: URL: https://data.gulfresearchinitiative.org Role: Role code: distributor Distributor format: Format: Name: xlsx Version: inapplicable File decompression technique: Distributor transfer options: Digital transfer options: Transfer size: 0.0339 Online: Online Resource: Linkage: URL: https://data.gulfresearchinitiative.org/data/R4.x259.191:0019 Protocol: https Name: Data Landing Page Description: GRIIDC dataset landing page Function: Online function code: information
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Metadata maintenance: Maintenance information: Maintenance and update frequency: unknown Maintenance note: This ISO metadata record was automatically generated from information provided to GRIIDC for dataset: R4.x259.191:0019 on 2020-12-01T11:31:30-06:00
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