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Dataset for: Transcriptomic responses to Deepwater Horizon oil in mahi-mahi (Coryphaena hippurus) embryos reveals time and oil-dependent linkages between molecular initiating events and developmental toxicity

Relationship of Effects of Cardiac Outcomes in Fish for Validation of Ecological Risk (RECOVER)

DOI:
10.7266/N7GX48ND
 
UDI:
R4.x258.258:0001
Last Update:
Jul 14 2016 17:49 UTC
 
Dataset Author(s):
Elvis Genbo Xu, Ph.D.
Point of Contact:
Munoz-Bustamante, Madeline
University of Miami / Rosenstiel School of Marine and Atmospheric Science
4600 Rickenbacker Cswy
Miami, Florida  33149
USA
mbustamante@rsmas.miami.edu
Funding Source:
RFP-IV
 
Extent Description:
Dataset contains strictly laboratory measurements, mahi-mahi broodstock were collected by hook and line near Miami, FL.

Identified Submitted Review Available
3 3 3 3

Abstract:

Total mRNA profiles of 24, 48, 96 hpf mahi-mah larvae after slick and source oil exposure were generated by deep sequencing, in triplicate, using Illumina HiSeq2500.

Purpose:

To help identify molecular mechanisms and pathways potentially involved in the developmental toxicity for fish exposed to Deepwater Horizon (DWH) oil, transcriptomic profiles in mahi-mahi (Coryphaena hippurus) embryos exposed to different DWH oils (source and artificially weathered oil) were evaluated at different critical windows of development using High Throughput Sequencing (HTS).

Theme Keywords:

Mahi Mahi, mRNA sequencing, time-course, embryos, Coryphaena hippurus

Dataset Downloads:

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Dataset for: Transcriptomic responses to Deepwater Horizon oil in mahi-mahi (Coryphaena hippurus) embryos reveals time and oil-dependent linkages between molecular initiating events and developmental toxicity



Identification Information
Distribution Information
Metadata Maintenance Information

Metadata: 
  File identifier: 
      R4.x258.258-0001-metadata.xml
  Language: 
      eng; USA
  Character set: 
    Character set code: 
      utf8
  Hierarchy level: 
    Scope code: 
      dataset
  Metadata author: 
    Responsible party: 
      Individual name: 
          Daniel Schlenk
      Organisation name: 
          University of California Riverside / Department of Environmental Sciences
      Position name: 
          Professor
      Contact info: 
        Contact: 
          Phone: 
            Telephone: 
              Voice: 
                  9518272018
              Facsimile: 
          Address: 
            Address: 
              Delivery point: 
                  900 University Avenue
                  Geology 2258
              City: 
                  Riverside
              Administrative area: 
                  California
              Postal code: 
                  92521
              Country: 
                  USA
              Electronic mail address: 
                  daniel.schlenk@ucr.edu
      Role: 
        Role code: 
          pointOfContact
  Date stamp: 
      2018-08-11T13:40:11+00:00
  Metadata standard name: 
      ISO 19115-2 Geographic Information - Metadata - Part 2: Extensions for Imagery and Gridded Data
  Metadata standard version: 
      ISO 19115-2:2009(E)
  Dataset URI: 
      https://data.gulfresearchinitiative.org/metadata/R4.x258.258:0001
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Identification info: Data identification: Citation: Citation: Title: Dataset for: Transcriptomic responses to Deepwater Horizon oil in mahi-mahi (Coryphaena hippurus) embryos reveals time and oil-dependent linkages between molecular initiating events and developmental toxicity Alternate title: Time-course mRNA sequencing on Mahi-mahi embryos Date: Date: Date: 2016-04-05 Date type: Date type code: publication Abstract: Total mRNA profiles of 24, 48, 96 hpf mahi-mah larvae after slick and source oil exposure were generated by deep sequencing, in triplicate, using Illumina HiSeq2500. Purpose: To help identify molecular mechanisms and pathways potentially involved in the developmental toxicity for fish exposed to Deepwater Horizon (DWH) oil, transcriptomic profiles in mahi-mahi (Coryphaena hippurus) embryos exposed to different DWH oils (source and artificially weathered oil) were evaluated at different critical windows of development using High Throughput Sequencing (HTS). Status: Progress code: completed Point of contact: Responsible party: Individual name: Madeline Munoz-Bustamante Organisation name: University of Miami / Rosenstiel School of Marine and Atmospheric Science Position name: Program Manager Contact info: Contact: Phone: Telephone: Voice: Facsimile: Address: Address: Delivery point: 4600 Rickenbacker Cswy City: Miami Administrative area: Florida Postal code: 33149 Country: USA Electronic mail address: mbustamante@rsmas.miami.edu Role: Role code: pointOfContact Point of contact: Responsible party: Individual name: Elvis Genbo Xu Organisation name: University of California Riverside / Department of Environmental Sciences Position name: Postdoctoral Fellow Contact info: Contact: Phone: Telephone: Voice: 9513137643 Facsimile: Address: Address: Delivery point: 900 University Ave City: Riverside Administrative area: California Postal code: 92521 Country: USA Electronic mail address: genboxu@126.com Role: Role code: pointOfContact Point of contact: Responsible party: Individual name: Daniel Schlenk Organisation name: University of California Riverside / Department of Environmental Sciences Position name: Professor Contact info: Contact: Phone: Telephone: Voice: 9518272018 Facsimile: Address: Address: Delivery point: 900 University Avenue Geology 2258 City: Riverside Administrative area: California Postal code: 92521 Country: USA Electronic mail address: daniel.schlenk@ucr.edu Role: Role code: pointOfContact Descriptive keywords: Keywords: Keyword: Mahi Mahi Keyword: mRNA sequencing Keyword: time-course Keyword: embryos Keyword: Coryphaena hippurus Type: Keyword type code: theme Descriptive keywords: Keywords: Keyword: inapplicable Type: Keyword type code: place Language: eng; USA Topic category: Topic category code: biota Extent: Extent: Description: Dataset contains strictly laboratory measurements, mahi-mahi broodstock were collected by hook and line near Miami, FL. Supplemental Information: total mRNA profiles, Run, BioSample, Sample name, MBases, Size (MBytes), Experiment, SRA Sample, transcript count, p-value, q-value, GeneID, concentration (g/l), slick = slick oil, mass = source HEWAF oil, Sample, Developmental Stage (24, 48 and 96 hours post fertilization (hpf)), treatment (control = 0 g/L, slick = 1 g/L, mass = 1 g/L)|||||
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Distribution info: Distribution: Distributor: Distributor: Distributor contact: Responsible party: Organisation name: NCBI Contact info: Contact: Phone: Telephone: Voice: 3014962475 Address: Address: Delivery point: National Library of Medicine 8600 Rockville Pike City: Bethesda Administrative area: Maryland Postal code: 20894 Country: USA Electronic mail address: info@ncbi.nlm.nih.gov Online Resource: Online Resource: Linkage: URL: https://www.ncbi.nlm.nih.gov Role: Role code: distributor Distributor format: Format: Name: Version: inapplicable File decompression technique: Distributor transfer options: Digital transfer options: Transfer size: Online: Online Resource: Linkage: URL: http://trace.ncbi.nlm.nih.gov/Traces/sra/?study=SRP072499 Protocol: https
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Metadata maintenance: Maintenance information: Maintenance and update frequency: unknown Maintenance note: This ISO metadata record was automatically generated from information provided to GRIIDC for dataset: R4.x258.258:0001 on 2018-10-15T19:29:46+00:00
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