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Dataset for: Transcriptomic responses to Deepwater Horizon oil in mahi-mahi (Coryphaena hippurus) embryos reveals time and oil-dependent linkages between molecular initiating events and developmental toxicity

Relationship of Effects of Cardiac Outcomes in Fish for Validation of Ecological Risk (RECOVER)

DOI:
10.7266/N7GX48ND
 
UDI:
R4.x258.258:0001
Last Update:
Jul 14 2016 17:49 UTC
 
Dataset Author(s):
Elvis Genbo Xu, Ph.D.
Point of Contact:
Schlenk, Daniel
University of California Riverside / Department of Environmental Sciences
900 University Avenue Geology 2258
Riverside, California  92521
USA
daniel.schlenk@ucr.edu
Funding Source:
RFP-IV
 
Extent Description:
Dataset contains strictly laboratory measurements, mahi-mahi broodstock were collected by hook and line near Miami, FL.

Identified Submitted Metadata Available
3 3 3 3

Abstract:

Total mRNA profiles of 24, 48, 96 hpf mahi-mah larvae after slick and source oil exposure were generated by deep sequencing, in triplicate, using Illumina HiSeq2500.

Purpose:

To help identify molecular mechanisms and pathways potentially involved in the developmental toxicity for fish exposed to Deepwater Horizon (DWH) oil, transcriptomic profiles in mahi-mahi (Coryphaena hippurus) embryos exposed to different DWH oils (source and artificially weathered oil) were evaluated at different critical windows of development using High Throughput Sequencing (HTS).

Theme Keywords:

Mahi Mahi, mRNA sequencing, time-course, embryos, Coryphaena hippurus

Dataset Downloads:

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Dataset for: Transcriptomic responses to Deepwater Horizon oil in mahi-mahi (Coryphaena hippurus) embryos reveals time and oil-dependent linkages between molecular initiating events and developmental toxicity



Identification Information
Distribution Information
Metadata Maintenance Information

Metadata: 
  File identifier: 
      R4.x258.258-0001-metadata.xml
  Language: 
      eng; USA
  Character set: 
    Character set code: 
      utf8
  Hierarchy level: 
    Scope code: 
      dataset
  Metadata author: 
    Responsible party: 
      Individual name: 
          Daniel Schlenk
      Organisation name: 
          University of California Riverside / Department of Environmental Sciences
      Position name: 
          Professor
      Contact info: 
        Contact: 
          Phone: 
            Telephone: 
              Voice: 
                  9518272018
              Facsimile: 
          Address: 
            Address: 
              Delivery point: 
                  900 University Avenue
              City: 
                  Riverside
              Administrative area: 
                  California
              Postal code: 
                  92521
              Country: 
                  USA
              Electronic mail address: 
                  daniel.schlenk@ucr.edu
      Role: 
        Role code: 
          pointOfContact
  Metadata author: 
    Responsible party: 
      Individual name: 
          Elvis Genbo Xu
      Organisation name: 
          University of California Riverside / Department of Environmental Sciences
      Position name: 
          Postdoctoral Fellow
      Contact info: 
        Contact: 
          Phone: 
            Telephone: 
              Voice: 
                  9513137643
              Facsimile: 
          Address: 
            Address: 
              Delivery point: 
                  900 University Ave
              City: 
                  Riverside
              Administrative area: 
                  California
              Postal code: 
                  92521
              Country: 
                  USA
              Electronic mail address: 
                  genboxu@126.com
      Role: 
        Role code: 
          pointOfContact
  Metadata author: 
    Responsible party: 
      Individual name: 
          Madeline Munoz-Bustamante
      Organisation name: 
          University of Miami / Rosenstiel School of Marine and Atmospheric Science
      Position name: 
          Program Manager
      Contact info: 
        Contact: 
          Address: 
            Address: 
              Delivery point: 
                  4600 Rickenbacker Cswy
              City: 
                  Miami
              Administrative area: 
                  Florida
              Postal code: 
                  33149
              Country: 
                  USA
              Electronic mail address: 
                  mbustamante@rsmas.miami.edu
      Role: 
        Role code: 
          pointOfContact
  Date stamp: 
      2017-07-12T18:40:52+00:00
  Metadata standard name: 
      ISO 19115-2 Geographic Information - Metadata - Part 2: Extensions for Imagery and Gridded Data
  Metadata standard version: 
      ISO 19115-2:2009(E)
  Dataset URI: 
      https://data.gulfresearchinitiative.org/metadata/R4.x258.258:0001
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Identification info: Data identification: Citation: Citation: Title: Dataset for: Transcriptomic responses to Deepwater Horizon oil in mahi-mahi (Coryphaena hippurus) embryos reveals time and oil-dependent linkages between molecular initiating events and developmental toxicity Alternate title: Time-course mRNA sequencing on Mahi-mahi embryos Date: Date: Date: 2016-04-05 Date type: Date type code: publication Abstract: Total mRNA profiles of 24, 48, 96 hpf mahi-mah larvae after slick and source oil exposure were generated by deep sequencing, in triplicate, using Illumina HiSeq2500. Purpose: To help identify molecular mechanisms and pathways potentially involved in the developmental toxicity for fish exposed to Deepwater Horizon (DWH) oil, transcriptomic profiles in mahi-mahi (Coryphaena hippurus) embryos exposed to different DWH oils (source and artificially weathered oil) were evaluated at different critical windows of development using High Throughput Sequencing (HTS). Status: Progress code: completed Point of contact: Responsible party: Individual name: Daniel Schlenk Organisation name: University of California Riverside / Department of Environmental Sciences Position name: Professor Contact info: Contact: Phone: Telephone: Voice: 9518272018 Facsimile: Address: Address: Delivery point: 900 University Avenue
                  City: 
                      Riverside
                  Administrative area: 
                      California
                  Postal code: 
                      92521
                  Country: 
                      USA
                  Electronic mail address: 
                      daniel.schlenk@ucr.edu
          Role: 
            Role code: 
              pointOfContact
      Point of contact: 
        Responsible party: 
          Individual name: 
              Elvis Genbo Xu
          Organisation name: 
              University of California Riverside / Department of Environmental Sciences
          Position name: 
              Postdoctoral Fellow
          Contact info: 
            Contact: 
              Phone: 
                Telephone: 
                  Voice: 
                      9513137643
                  Facsimile: 
              Address: 
                Address: 
                  Delivery point: 
                      900 University Ave
                  City: 
                      Riverside
                  Administrative area: 
                      California
                  Postal code: 
                      92521
                  Country: 
                      USA
                  Electronic mail address: 
                      genboxu@126.com
          Role: 
            Role code: 
              pointOfContact
      Point of contact: 
        Responsible party: 
          Individual name: 
              Madeline Munoz-Bustamante
          Organisation name: 
              University of Miami / Rosenstiel School of Marine and Atmospheric Science
          Position name: 
              Program Manager
          Contact info: 
            Contact: 
              Address: 
                Address: 
                  Delivery point: 
                      4600 Rickenbacker Cswy
                  City: 
                      Miami
                  Administrative area: 
                      Florida
                  Postal code: 
                      33149
                  Country: 
                      USA
                  Electronic mail address: 
                      mbustamante@rsmas.miami.edu
          Role: 
            Role code: 
              pointOfContact
      Descriptive keywords: 
        Keywords: 
          Keyword: 
              Mahi Mahi
          Keyword: 
              mRNA sequencing
          Keyword: 
              time-course
          Keyword: 
              embryos
          Keyword: 
              Coryphaena hippurus
          Type: 
            Keyword type code: 
              theme
      Descriptive keywords: 
        Keywords: 
          Keyword: 
            inapplicable
          Type: 
            Keyword type code: 
              place
      Language: 
          eng; USA
      Topic category: 
        Topic category code: 
          biota
      Extent: 
        Extent: 
          Description: 
              Dataset contains strictly laboratory measurements, mahi-mahi broodstock were collected by hook and line 
              near Miami, FL.
      Supplemental Information: 
          total mRNA profiles, Run, BioSample, Sample name, MBases, Size (MBytes), Experiment, SRA Sample, transcript 
          count, p-value, q-value, GeneID, concentration (g/l), slick = slick oil, mass = source HEWAF oil, Sample, 
          Developmental Stage (24, 48 and 96 hours post fertilization (hpf)), treatment (control = 0 g/L, slick = 1 
          g/L, mass = 1 g/L)|||||
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Distribution info: Distribution: Distributor: Distributor: Distributor contact: Responsible party: Organisation name: National Center for Biotechnology Information (NCBI) Position name: Contact info: Contact: Phone: Telephone: Voice: 1 888-346-3656 Facsimile: Address: Address: Delivery point: National Library of Medicine 8600 Rockville Pike City: Bethesda Administrative area: Maryland Postal code: 20894 Country: USA Electronic mail address: info@ncbi.nml.nih.gov Online Resource: Online Resource: Linkage: URL: http://www.ncbi.nml.nih.gov Protocol: http Role: Role code: distributor Distributor format: Format: Name: Version: inapplicable File decompression technique: Distributor transfer options: Digital transfer options: Transfer size: 28430 Online: Online Resource: Linkage: URL: http://trace.ncbi.nlm.nih.gov/Traces/sra/?study=SRP072499 Protocol: http
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Metadata maintenance: Maintenance information: Maintenance and update frequency: unknown Maintenance note: This ISO metadata record was automatically generated by the GRIIDC Metadata Generator from DIF and Registry information provided to GRIIDC for dataset: R4.x258.258:0001 on 2016-04-05T18:26:40+00:00 Maintenance note: This ISO metadata record was created using the 'Check and Save to File' (with form validation) function of the GRIIDC ISO 19115-2 Metadata Editor on 2016-04-05T18:35:28+00:00 Maintenance note: This ISO metadata record was created using the 'Save to File' (no form validation) function of the GRIIDC ISO 19115-2 Metadata Editor on 2016-07-07T19:06:37+00:00
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