MicroRNA sequencing data from Mahi exposed samples
Identification InformationDistribution InformationMetadata Maintenance Information
Metadata:
File identifier:
R4.x258.000-0040-metadata.xml
Language:
eng; USA
Character set:
Character set code:
utf8
Hierarchy level:
Scope code:
dataset
Metadata author:
Responsible party:
Individual name:
Madeline Munoz-Bustamante
Organisation name:
University of Miami / Rosenstiel School of Marine and Atmospheric Science
Position name:
Program Manager
Contact info:
Contact:
Phone:
Telephone:
Voice:
Facsimile:
Address:
Address:
Delivery point:
4600 Rickenbacker Cswy
City:
Miami
Administrative area:
Florida
Postal code:
33149
Country:
USA
Electronic mail address:
mbustamante@rsmas.miami.edu
Role:
Role code:
pointOfContact
Date stamp:
2018-08-11T13:43:09+00:00
Metadata standard name:
ISO 19115-2 Geographic Information - Metadata - Part 2: Extensions for Imagery and Gridded Data
Metadata standard version:
ISO 19115-2:2009(E)
Dataset URI:
https://data.gulfresearchinitiative.org/metadata/R4.x258.000:0040
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Identification info:
Data identification:
Citation:
Citation:
Title:
MicroRNA sequencing data from Mahi exposed samples
Alternate title:
Date:
Date:
Date:
2017-12-22
Date type:
Date type code:
publication
Identifier:
Identifier:
Code:
Anchor: xlink: https://dx.doi.org/10.7266/N70Z71QJ title: DOI
doi:10.7266/N70Z71QJ
Abstract:
MicroRNAs (miRNA) play key roles in diverse biological processes including heart development. In our study, we
evaluated the effects of DHW oil on miRNA expression in mahi-mahi (Coryphaena hippurus) embryos exposed to
WAF from weathered slick oil and non-weathered source oil. miRNA and mRNA was compared using downstream
bioinformatics with subsequent target organ predictions based on their interactions. Using two methods miRNA
sequences were annotated using the Fugu rubripes genome or using BLAST. Our data showed that exposure of
embryos to slick oil resulted in more differentially expressed (DE) miRNAs than source oil at all
developmental stages 24hpf, 48hpf and 96hpf. There was also an increase in the number of DE miRNA as
development progressed, 96h having the highest number of DE miRNAs. Gene ontology (GO) analysis on the
target mRNAs was consistent with pathways analysis of miRNAs, predicting disruption of cardiovascular system
development after oil exposure and showed specific miRNA–mRNA interactions that may contribute to these
effects. This work is the first study linking miRNAs and mRNAs in fish responsive to DWH oil exposure,
providing a new opportunity for better understanding of the molecular mechanism of DWH oil toxicity.
Purpose:
To further understand the role of microRNAs on oil induced toxicity at different time points during development.
Status:
Progress code:
completed
Point of contact:
Responsible party:
Individual name:
Daniel Schlenk
Organisation name:
University of California Riverside / Department of Environmental Sciences
Position name:
Professor
Contact info:
Contact:
Phone:
Telephone:
Voice:
9518272018
Facsimile:
Address:
Address:
Delivery point:
900 University Avenue
Geology 2258
City:
Riverside
Administrative area:
California
Postal code:
92521
Country:
USA
Electronic mail address:
daniel.schlenk@ucr.edu
Role:
Role code:
pointOfContact
Descriptive keywords:
Keywords:
Keyword:
mahi mahi
Keyword:
microRNA
Keyword:
Slick Oil
Keyword:
Source Oil
Keyword:
Coryphaena hippurus
Type:
Keyword type code:
theme
Descriptive keywords:
Keywords:
Keyword:
inapplicable
Type:
Keyword type code:
place
Resource constraints: title: Cite As
Constraints:
Use limitation:
Schlenk, Daniel; Diamante, Graciel. 2017. MicroRNA sequencing data from Mahi exposed samples. Distributed
by: Gulf of Mexico Research Initiative Information and Data Cooperative (GRIIDC), Harte Research
Institute, Texas A&M University–Corpus Christi. doi:10.7266/N70Z71QJ
Resource constraints: title: CC0 License
Legal constraints:
Use constraints:
Restriction code:
licenceUnrestricted
Other constraints:
This information is released under the Creative Commons license - No Rights Reserved - CC0 1.0 Universal
(https://creativecommons.org/publicdomain/zero/1.0/). The person who associated a work with this deed
has dedicated the work to the public domain by waiving all of his or her rights to the work worldwide
under copyright law, including all related and neighboring rights, to the extent allowed by law. You can
copy, modify, distribute and perform the work, even for commercial purposes, all without asking
permission.
Resource constraints: title: Liability and Warranty
Legal constraints:
Other constraints:
All materials on this website are made available to GRIIDC and in turn to you "as-is." Content may only be
submitted by an individual who represents and warrants that s/he has sufficient rights to be able to
make the content available under a CC0 waiver. There is no warranty (expressed or implied) to these
materials, their title, accuracy, non-infringement of third party rights, or fitness for any particular
purpose, including the performance or results you may obtain from their use. Use these materials at your
own risk. Under no circumstances shall GRIIDC be liable for any direct, incidental, special,
consequential, indirect, or punitive damages that result from the use or the inability to use either
this website or the materials available via this website. If you are dissatisfied with any website
feature, content, or terms of use, your sole and exclusive remedy is to discontinue use.
Aggregation Info:
AggregateInformation:
Aggregate Data Set Name: title: Related Publication Citation
Citation:
Title:
Diamante, G., Xu, E. G., Chen, S., Mager, E., Grosell, M., & Schlenk, D. (2017). Differential
Expression of MicroRNAs in Embryos and Larvae of Mahi-Mahi (Coryphaena hippurus) Exposed to
Deepwater Horizon Oil. Environmental Science & Technology Letters, 4(12), 523–529.
doi:10.1021/acs.estlett.7b00484
Date:
inapplicable
Aggregate Data Set Identifier: title: Related Publication DOI
Identifier:
Code:
Anchor: xlink: https://dx.doi.org/10.1021/acs.estlett.7b00484 title: DOI
doi:10.1021/acs.estlett.7b00484
Association Type:
Association type code:
crossReference
Language:
eng; USA
Topic category:
Topic category code:
biota
Extent:
Extent:
Description:
Dataset contains micro RNA sequencing, no field sampling involved.
Supplemental Information:
Number (NCBI GEO Accession number), File name, Stage (hpf), Concentration (g/L), Oil type (Control, Slick, or
Source) microRNA expression analysis Data are available at NCBI Accession Number GSE102966, Bioproject
Accession PRJNA399845 and SRA Study SRP116083|microRNA sequencing using NEBNext® Small RNA Library Prep Set
for Illumina|NEXTseq v2|||
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Distribution info:
Distribution:
Distributor:
Distributor:
Distributor contact:
Responsible party:
Organisation name:
Gulf of Mexico Research Initiative Information and Data Cooperative (GRIIDC)
Contact info:
Contact:
Phone:
Telephone:
Voice:
3618253604
Address:
Address:
Delivery point:
6300 Ocean Drive
City:
Corpus Christi
Administrative area:
TX
Postal code:
78412
Country:
USA
Electronic mail address:
griidc@gomri.org
Online Resource:
Online Resource:
Linkage:
URL:
https://data.gulfresearchinitiative.org
Role:
Role code:
distributor
Distributor format:
Format:
Name:
xlsx
Version:
inapplicable
File decompression technique:
Distributor transfer options:
Digital transfer options:
Transfer size:
0.0531
Online:
Online Resource:
Linkage:
URL:
https://data.gulfresearchinitiative.org/data/R4.x258.000:0040
Protocol:
https
Name:
Data Landing Page
Description:
GRIIDC dataset landing page
Function:
Online function code:
information
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Metadata maintenance:
Maintenance information:
Maintenance and update frequency:
unknown
Maintenance note:
This ISO metadata record was automatically generated from information provided to GRIIDC for dataset:
R4.x258.000:0040 on 2021-03-02T02:28:54-06:00
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<gmd:URL>https://data.gulfresearchinitiative.org/data/R4.x258.000:0040</gmd:URL>
</gmd:linkage>
<gmd:protocol>
<gco:CharacterString>https</gco:CharacterString>
</gmd:protocol>
<gmd:name>
<gco:CharacterString>Data Landing Page</gco:CharacterString>
</gmd:name>
<gmd:description>
<gco:CharacterString>GRIIDC dataset landing page</gco:CharacterString>
</gmd:description>
<gmd:function>
<gmd:CI_OnLineFunctionCode codeList="http://www.isotc211.org/2005/resources/Codelist/gmxCodelists.xml#CI_OnLineFunctionCode" codeListValue="information" codeSpace="002">information</gmd:CI_OnLineFunctionCode>
</gmd:function>
</gmd:CI_OnlineResource>
</gmd:onLine>
</gmd:MD_DigitalTransferOptions>
</gmd:distributorTransferOptions>
</gmd:MD_Distributor>
</gmd:distributor>
</gmd:MD_Distribution>
</gmd:distributionInfo>
<gmd:metadataMaintenance>
<gmd:MD_MaintenanceInformation>
<gmd:maintenanceAndUpdateFrequency gco:nilReason="unknown" />
<gmd:maintenanceNote>
<gco:CharacterString>This ISO metadata record was automatically generated from information provided to GRIIDC for dataset: R4.x258.000:0040 on 2021-03-02T02:28:54-06:00</gco:CharacterString>
</gmd:maintenanceNote>
</gmd:MD_MaintenanceInformation>
</gmd:metadataMaintenance>
</gmi:MI_Metadata>