Metadata: 
  File identifier: 
      R4.x258.000-0040-metadata.xml
  Language: 
      eng; USA
  Character set: 
    Character set code: 
      utf8
  Hierarchy level: 
    Scope code: 
      dataset
  Metadata author: 
    Responsible party: 
      Individual name: 
          Madeline Munoz-Bustamante
      Organisation name: 
          University of Miami / Rosenstiel School of Marine and Atmospheric Science
      Position name: 
          Program Manager
      Contact info: 
        Contact: 
          Phone: 
            Telephone: 
              Voice: 
              Facsimile: 
          Address: 
            Address: 
              Delivery point: 
                  4600 Rickenbacker Cswy
              City: 
                  Miami
              Administrative area: 
                  Florida
              Postal code: 
                  33149
              Country: 
                  USA
              Electronic mail address: 
                  mbustamante@rsmas.miami.edu
      Role: 
        Role code: 
          pointOfContact
  Date stamp: 
      2021-05-04T20:04:57+00:00
  Metadata standard name: 
      ISO 19115-2 Geographic Information - Metadata - Part 2: Extensions for Imagery and Gridded Data
  Metadata standard version: 
      ISO 19115-2:2009(E)
  Dataset URI: 
      https://data.gulfresearchinitiative.org/metadata/R4.x258.000:0040
Return To Index
  Identification info: 
    Data identification: 
      Citation: 
        Citation: 
          Title: 
              MicroRNA sequencing data from Mahi exposed samples
          Alternate title: 
          Date: 
            Date: 
              Date: 
                  2017-12-22
              Date type: 
                Date type code: 
                  publication
          Identifier: 
            Identifier: 
              Code: 
                Anchor: xlink: https://dx.doi.org/10.7266/N70Z71QJ title: DOI
                  doi:10.7266/N70Z71QJ
      Abstract: 
          MicroRNAs (miRNA) play key roles in diverse biological processes including heart development. In our study, we 
          evaluated the effects of DHW oil on miRNA expression in mahi-mahi (Coryphaena hippurus) embryos exposed to 
          WAF from weathered slick oil and non-weathered source oil. miRNA and mRNA was compared using downstream 
          bioinformatics with subsequent target organ predictions based on their interactions. Using two methods miRNA 
          sequences were annotated using the Fugu rubripes genome or using BLAST. Our data showed that exposure of 
          embryos to slick oil resulted in more differentially expressed (DE) miRNAs than source oil at all 
          developmental stages 24hpf, 48hpf and 96hpf. There was also an increase in the number of DE miRNA as 
          development progressed, 96h having the highest number of DE miRNAs. Gene ontology (GO) analysis on the 
          target mRNAs was consistent with pathways analysis of miRNAs, predicting disruption of cardiovascular system 
          development after oil exposure and showed specific miRNA–mRNA interactions that may contribute to these 
          effects. This work is the first study linking miRNAs and mRNAs in fish responsive to DWH oil exposure, 
          providing a new opportunity for better understanding of the molecular mechanism of DWH oil toxicity.
      Purpose: 
          To further understand the role of microRNAs on oil induced toxicity at different time points during development.
      Status: 
        Progress code: 
          completed
      Point of contact: 
        Responsible party: 
          Individual name: 
              Daniel Schlenk
          Organisation name: 
              University of California Riverside / Department of Environmental Sciences
          Position name: 
              Professor
          Contact info: 
            Contact: 
              Phone: 
                Telephone: 
                  Voice: 
                      9518272018
                  Facsimile: 
              Address: 
                Address: 
                  Delivery point: 
                      900 University Avenue
                      Geology 2258
                  City: 
                      Riverside
                  Administrative area: 
                      California
                  Postal code: 
                      92521
                  Country: 
                      USA
                  Electronic mail address: 
                      daniel.schlenk@ucr.edu
          Role: 
            Role code: 
              pointOfContact
      Descriptive keywords: 
        Keywords: 
          Keyword: 
              mahi mahi
          Keyword: 
              microRNA
          Keyword: 
              Slick Oil
          Keyword: 
              Source Oil
          Keyword: 
              Coryphaena hippurus
          Type: 
            Keyword type code: 
              theme
      Descriptive keywords: 
        Keywords: 
          Keyword: 
            inapplicable
          Type: 
            Keyword type code: 
              place
      Resource constraints:  title: Cite As
        Constraints: 
          Use limitation: 
              Schlenk, Daniel; Diamante, Graciel. 2017. MicroRNA sequencing data from Mahi exposed samples. Distributed 
              by: Gulf of Mexico Research Initiative Information and Data Cooperative (GRIIDC), Harte Research 
              Institute, Texas A&M University–Corpus Christi. doi:10.7266/N70Z71QJ
      Resource constraints:  title: CC0 License
        Legal constraints: 
          Use constraints: 
            Restriction code: 
              licenceUnrestricted
          Other constraints: 
              This information is released under the Creative Commons license - No Rights Reserved - CC0 1.0 Universal 
              (https://creativecommons.org/publicdomain/zero/1.0/). The person who associated a work with this deed 
              has dedicated the work to the public domain by waiving all of his or her rights to the work worldwide 
              under copyright law, including all related and neighboring rights, to the extent allowed by law. You can 
              copy, modify, distribute and perform the work, even for commercial purposes, all without asking 
              permission.
      Resource constraints:  title: Liability and Warranty
        Legal constraints: 
          Other constraints: 
              All materials on this website are made available to GRIIDC and in turn to you "as-is." Content may only be 
              submitted by an individual who represents and warrants that s/he has sufficient rights to be able to 
              make the content available under a CC0 waiver. There is no warranty (expressed or implied) to these 
              materials, their title, accuracy, non-infringement of third party rights, or fitness for any particular 
              purpose, including the performance or results you may obtain from their use. Use these materials at your 
              own risk. Under no circumstances shall GRIIDC be liable for any direct, incidental, special, 
              consequential, indirect, or punitive damages that result from the use or the inability to use either 
              this website or the materials available via this website. If you are dissatisfied with any website 
              feature, content, or terms of use, your sole and exclusive remedy is to discontinue use.
      Aggregation Info: 
        AggregateInformation: 
          Aggregate Data Set Name:  title: Related Publication Citation
            Citation: 
              Title: 
                  Diamante, G., Xu, E. G., Chen, S., Mager, E., Grosell, M., & Schlenk, D. (2017). Differential 
                  Expression of MicroRNAs in Embryos and Larvae of Mahi-Mahi (Coryphaena hippurus) Exposed to 
                  Deepwater Horizon Oil. Environmental Science & Technology Letters, 4(12), 523–529. 
                  doi:10.1021/acs.estlett.7b00484
              Date: 
                inapplicable
          Aggregate Data Set Identifier:  title: Related Publication DOI
            Identifier: 
              Code: 
                Anchor: xlink: https://dx.doi.org/10.1021/acs.estlett.7b00484 title: DOI
                  doi:10.1021/acs.estlett.7b00484
          Association Type: 
            Association type code: 
              crossReference
      Language: 
          eng; USA
      Topic category: 
        Topic category code: 
          biota
      Extent: 
        Extent: 
          Description: 
              Dataset contains micro RNA sequencing, no field sampling involved.
      Supplemental Information: 
          Number (NCBI GEO Accession number), File name, Stage (hpf), Concentration (g/L), Oil type (Control, Slick, or 
          Source) microRNA expression analysis Data are available at NCBI Accession Number GSE102966, Bioproject 
          Accession PRJNA399845 and SRA Study SRP116083|microRNA sequencing using NEBNext® Small RNA Library Prep Set 
          for Illumina|NEXTseq v2|||
Return To Index
  Distribution info: 
    Distribution: 
      Distributor: 
        Distributor: 
          Distributor contact: 
            Responsible party: 
              Organisation name: 
                  Gulf of Mexico Research Initiative Information and Data Cooperative (GRIIDC)
              Contact info: 
                Contact: 
                  Phone: 
                    Telephone: 
                      Voice: 
                          3618253604
                  Address: 
                    Address: 
                      Delivery point: 
                          6300 Ocean Drive
                      City: 
                          Corpus Christi
                      Administrative area: 
                          TX
                      Postal code: 
                          78412
                      Country: 
                          USA
                      Electronic mail address: 
                          griidc@gomri.org
                  Online Resource: 
                    Online Resource: 
                      Linkage: 
                        URL: 
                          https://data.gulfresearchinitiative.org
              Role: 
                Role code: 
                  distributor
          Distributor format: 
            Format: 
              Name: 
                  xlsx
              Version: 
                inapplicable
              File decompression technique: 
          Distributor transfer options: 
            Digital transfer options: 
              Transfer size: 
                  0.0531
              Online: 
                Online Resource: 
                  Linkage: 
                    URL: 
                      https://data.gulfresearchinitiative.org/data/R4.x258.000:0040
                  Protocol: 
                      https
                  Name: 
                      Data Landing Page
                  Description: 
                      GRIIDC dataset landing page
                  Function: 
                    Online function code: 
                      information
Return To Index
  Metadata maintenance: 
    Maintenance information: 
      Maintenance and update frequency: 
        unknown
      Maintenance note: 
          This ISO metadata record was automatically generated from information provided to GRIIDC for dataset: 
          R4.x258.000:0040 on 2021-05-13T14:46:51-05:00
Return To Index