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Complete bacterial symbiont genome sequences from anglerfish Cryptopsaras couesii and Melanocetus johnsonii

Deep-Pelagic Nekton Dynamics of the Gulf of Mexico (DEEPEND)

DOI:
10.7266/N7JM2830
 
UDI:
R4.x257.000:0012
Last Update:
Nov 13 2017 15:13 UTC
 
Dataset Author(s):
Lindsay L. Freed, Dana Fadera, Danté Fenolio, Tracey T. Sutton, Jose Lopez
Point of Contact:
Lopez, Jose V.
Nova Southeastern University / Halmos College of Natural Sciences and Oceanography
3301 College Ave
Fort Lauderdale, Florida  33314
USA
Joslo@Nova.edu
Funding Source:
RFP-IV
Data Collection Period:
2015-05-02 to 2015-08-16

Identified Submitted Review Available
3 3 3 3

Abstract:

These are the complete bacterial symbiont genome sequences from anglerfish Cryptopsaras couesii (individual CC26) and one individual Melanocetus johnsonii. These data were generated and analyzed by the laboratory of Dr Tory Hendry (Cornell University). The full sequences of two symbiotic bacterial genomes have been submitted to public DDBJ/ENA/GenBank repositories under the accessions CP020660- CP020663 (CC26 Cryptopsaras couesii) and NBYY01000001-NBYY01000039 (Melanocetus johnsonii). The total genome size for each of the symbiont species is about 2-2.6 Mb.

Purpose:

To better understand the potential roles and metabolism of bacterial symbionts that produce bioluminescence for two anglerfish species found in Gulf of Mexico aphotic pelagic zones.

Theme Keywords:

Whole genome, pelagic, bioluminescent symbiosis, deep sea anglerfish, transposable element proliferation, Cryptopsaras couesii, Melanocetus johnsonii

File Format:

csv

Dataset Downloads:

1

Complete bacterial symbiont genome sequences from anglerfish Cryptopsaras couesii and Melanocetus johnsonii



Identification Information
Distribution Information
Metadata Maintenance Information

Metadata: 
  File identifier: 
      R4.x257.000-0012-metadata.xml
  Language: 
      eng; USA
  Character set: 
    Character set code: 
      utf8
  Hierarchy level: 
    Scope code: 
      dataset
  Metadata author: 
    Responsible party: 
      Individual name: 
          Jose V. Lopez
      Organisation name: 
          Nova Southeastern University / Halmos College of Natural Sciences and Oceanography
      Position name: 
          Professor
      Contact info: 
        Contact: 
          Phone: 
            Telephone: 
              Voice: 
                  9542623665
              Facsimile: 
          Address: 
            Address: 
              Delivery point: 
                  3301 College Ave
              City: 
                  Fort Lauderdale
              Administrative area: 
                  Florida
              Postal code: 
                  33314
              Country: 
                  USA
              Electronic mail address: 
                  Joslo@Nova.edu
      Role: 
        Role code: 
          pointOfContact
  Date stamp: 
      2018-08-11T13:42:48+00:00
  Metadata standard name: 
      ISO 19115-2 Geographic Information - Metadata - Part 2: Extensions for Imagery and Gridded Data
  Metadata standard version: 
      ISO 19115-2:2009(E)
  Dataset URI: 
      https://data.gulfresearchinitiative.org/metadata/R4.x257.000:0012
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Identification info: Data identification: Citation: Citation: Title: Complete bacterial symbiont genome sequences from anglerfish Cryptopsaras couesii and Melanocetus johnsonii Alternate title: Complete bacterial symbiont genome sequences from anglerfish Date: Date: Date: 2017-10-02 Date type: Date type code: publication Abstract: These are the complete bacterial symbiont genome sequences from anglerfish Cryptopsaras couesii (individual CC26) and one individual Melanocetus johnsonii. These data were generated and analyzed by the laboratory of Dr Tory Hendry (Cornell University). The full sequences of two symbiotic bacterial genomes have been submitted to public DDBJ/ENA/GenBank repositories under the accessions CP020660- CP020663 (CC26 Cryptopsaras couesii) and NBYY01000001-NBYY01000039 (Melanocetus johnsonii). The total genome size for each of the symbiont species is about 2-2.6 Mb. Purpose: To better understand the potential roles and metabolism of bacterial symbionts that produce bioluminescence for two anglerfish species found in Gulf of Mexico aphotic pelagic zones. Status: Progress code: completed Point of contact: Responsible party: Individual name: Jose V. Lopez Organisation name: Nova Southeastern University / Halmos College of Natural Sciences and Oceanography Position name: Professor Contact info: Contact: Phone: Telephone: Voice: 9542623665 Facsimile: Address: Address: Delivery point: 3301 College Ave City: Fort Lauderdale Administrative area: Florida Postal code: 33314 Country: USA Electronic mail address: Joslo@Nova.edu Role: Role code: pointOfContact Point of contact: Responsible party: Individual name: Tory Hendry Organisation name: Cornell University / Department of Microbiology Position name: Research Scientist Contact info: Contact: Phone: Telephone: Voice: 6072251950 Facsimile: Address: Address: Delivery point: 260 Wing Hall City: Ithaca Administrative area: New York Postal code: 14853 Country: USA Electronic mail address: th572@cornell.edu Role: Role code: author Descriptive keywords: Keywords: Keyword: Whole genome Keyword: pelagic Keyword: bioluminescent symbiosis Keyword: deep sea anglerfish Keyword: transposable element proliferation Keyword: Cryptopsaras couesii Keyword: Melanocetus johnsonii Type: Keyword type code: theme Descriptive keywords: Keywords: Keyword: northern Gulf of Mexico Type: Keyword type code: place Language: eng; USA Topic category: Topic category code: oceans Topic category: Topic category code: biota Extent: Extent: Geographic element: Geographic bounding box: West bound longitude: -88.02 East bound longitude: -86.9372 South bound latitude: 28.42853 North bound latitude: 29.058 Geographic element: BoundingPolygon: Polygon: gml:MultiCurve: gml:curveMember: gml:Curve: gml:segments: gml:LineStringSegment: gml:posList: 28.918 -87.998 29.058 -88.02 gml:curveMember: gml:Curve: gml:segments: gml:LineStringSegment: gml:posList: 28.54901 -87.02955 28.42853 -86.9372 Temporal element: Temporal extent: Extent: Time period: Description: ground condition Begin date: 2015-05-02 End date: 2015-08-16 Supplemental Information: Genus, Species, Individual specimen, Collection cruise, Genome sequences, Genbank accession number, Nucleotide base pairs, NCBI URL Specimen, Cruise number, Station number, Trawl start latitude, Trawl start longitude, Trawl end latitude, Trawl end longitude, Date (MM/DD/YYYY), Net number, Start depth, End depth MJ02, DP01, B001, 28.918, -87.998, 29.058, -88.02, 05/02/2015, Net 0, 0m, 1143m CC26, DP02, B080, 28.54901, -87.02955, 28.42853, -86.9372, 08/16/2015, Net 0, 0m, 751m |Paired-end libraries were sequenced with a 250 bp read length on an Illumina HiSeq2500 instrument at the Cornell University Institute of Biotechnology Biotechnology Resource Center Genomics Facility.||||
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Distribution info: Distribution: Distributor: Distributor: Distributor contact: Responsible party: Organisation name: Gulf of Mexico Research Initiative Information and Data Cooperative (GRIIDC) Contact info: Contact: Phone: Telephone: Voice: 3618253604 Address: Address: Delivery point: 6300 Ocean Drive City: Corpus Christi Administrative area: TX Postal code: 78412 Country: USA Electronic mail address: griidc@gomri.org Online Resource: Online Resource: Linkage: URL: https://data.gulfresearchinitiative.org Role: Role code: distributor Distributor format: Format: Name: csv Version: inapplicable File decompression technique: Distributor transfer options: Digital transfer options: Transfer size: 0.0008 Online: Online Resource: Linkage: URL: https://data.gulfresearchinitiative.org/data/R4.x257.000:0012 Protocol: https
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Metadata maintenance: Maintenance information: Maintenance and update frequency: unknown Maintenance note: This ISO metadata record was automatically generated from information provided to GRIIDC for dataset: R4.x257.000:0012 on 2018-12-12T22:59:42+00:00
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