Abstract:

This data set includes three alignments (12S, 16S, COI) of mitochondrial DNA sequences, as well as two raw fastq files generated through the next-generation sequencing (NGS) method ddRADseq. This data was collected from Bathynomus giganteus specimens collected from throughout the northeastern Gulf of Mexico.

Suggested Citation:

Timm, Laura; Moahamed, Barbara. 2018. Mitochondrial DNA sequence alignments and raw fastq files for the population genetic analysis of the deep sea isopod, Bathynomus giganteus. Distributed by: Gulf of Mexico Research Initiative Information and Data Cooperative (GRIIDC), Harte Research Institute, Texas A&M University–Corpus Christi. doi:10.7266/N7VX0F19

Publications:

Timm, L. E., Moahamed, B., Churchill, D. A., & Bracken-Grissom, H. D. (2018). Bathynomus giganteus (Isopoda: Cirolanidae) and the canyon: a population genetics assessment of De Soto Canyon as a glacial refugium for the giant deep-sea isopod. Hydrobiologia. doi:10.1007/s10750-018-3563-6

Purpose:

These data were generated to characterize population dynamics of the Giant Deep-Sea Isopod in the northern Gulf of Mexico.

Data Parameters and Units:

Mitochondrial DNA sequence data and raw fastq files generated from ddRADseq HBG Number (internal reference number); Phylum; Class; Order; Family; Genus; Species; 12S (yes or no); 12S Forward primer; 12S Reverse primer; 16S (yes or no); 16S Forward primer; 16S Reverse primer; COI (yes or no); COI Forward primer; COI Reverse primer; ddRADseq (yes or no); Illumina i7 index; Barcode sequence; Collection date (MM/DD/YYYY); Latitude (decimal degrees); Longitude (decimal degrees); GenBank Accession numbers

Individual Files: