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Mesocosm experiment with single PAH - experimental design, mesocosm water and sediment environmental data, bioturbator dataThe Effect of Sediment Bioturbators on the Biological Degradation of Petroleum in Coastal Ecosystems
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Suggested Citation:
Klerks, Paul. 2017. Mesocosm experiment with single PAH - experimental design, mesocosm water and sediment environmental data, bioturbator data. Distributed by: Gulf of Mexico Research Initiative Information and Data Cooperative (GRIIDC), Harte Research Institute, Texas A&M University–Corpus Christi. doi:10.7266/N7W093WS
Abstract:
This dataset covers part of the data for experiments in which a single PAH was added to mesocosms. Data provided here are experimental design, bioturbator data (including survival/recovery) and environmental data (D.O., redox, turbidity, etc.) for sediment and water in the mesocosms. Data on PAH levels in water and sediment will be provided in a separate dataset.
Purpose:
Experiment aimed at determining the effect of bioturbators on the distribution and degradation of petroleum hydrocarbons in nearshore environments. This specific dataset provides data on experimental design and bioturbator information (as background information) and data on environmental variables measured in the mesocosms. The environmental data are meant to provide insights on how the bioturbators may be affecting the distribution and biodegradation of the hydrocarbons.
Theme Keywords:
petroleum hydrocarbons, biodegradation, fate and distribution, mesocosms, bioturbation, pyrene, PAHs
File Format:
xlsx
Filename:
water_sed_quality_data_mesocosm_exps.zip (138.83 KB)
Dataset Downloads:
2
Mesocosm experiment with single PAH - experimental design, mesocosm water and sediment environmental data, bioturbator data
Identification Information
Distribution Information
Metadata Maintenance Information
Metadata:
File identifier:
R2.x226.000-0001-metadata.xml
Language:
eng; USA
Character set:
Character set code:
utf8
Hierarchy level:
Scope code:
dataset
Metadata author:
Responsible party:
Individual name:
Paul L. Klerks
Organisation name:
University of Louisiana at Lafayette / Department of Biology
Position name:
Professor
Contact info:
Contact:
Phone:
Telephone:
Voice:
3374826356
Facsimile:
Address:
Address:
Delivery point:
P.O.Box 42451
City:
Lafayette
Administrative area:
Louisiana
Postal code:
70504
Country:
USA
Electronic mail address:
klerks@louisiana.edu
Role:
Role code:
pointOfContact
Date stamp:
2021-05-04T20:04:57+00:00
Metadata standard name:
ISO 19115-2 Geographic Information - Metadata - Part 2: Extensions for Imagery and Gridded Data
Metadata standard version:
ISO 19115-2:2009(E)
Dataset URI:
https://data.gulfresearchinitiative.org/metadata/R2.x226.000:0001
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Identification info:
Data identification:
Citation:
Citation:
Title:
Mesocosm experiment with single PAH - experimental design, mesocosm water and sediment environmental data,
bioturbator data
Alternate title:
Mesocosm experiment basic and environmental data, single PAH experiment.
Date:
Date:
Date:
2017-03-01
Date type:
Date type code:
publication
Identifier:
Identifier:
Code:
Anchor: xlink: https://dx.doi.org/10.7266/N7W093WS title: DOI
doi:10.7266/N7W093WS
Abstract:
This dataset covers part of the data for experiments in which a single PAH was added to mesocosms. Data
provided here are experimental design, bioturbator data (including survival/recovery) and environmental data
(D.O., redox, turbidity, etc.) for sediment and water in the mesocosms. Data on PAH levels in water and
sediment will be provided in a separate dataset.
Purpose:
Experiment aimed at determining the effect of bioturbators on the distribution and degradation of petroleum
hydrocarbons in nearshore environments. This specific dataset provides data on experimental design and
bioturbator information (as background information) and data on environmental variables measured in the
mesocosms. The environmental data are meant to provide insights on how the bioturbators may be affecting the
distribution and biodegradation of the hydrocarbons.
Status:
Progress code:
completed
Point of contact:
Responsible party:
Individual name:
Paul L. Klerks
Organisation name:
University of Louisiana at Lafayette / Department of Biology
Position name:
Professor
Contact info:
Contact:
Phone:
Telephone:
Voice:
3374826356
Facsimile:
Address:
Address:
Delivery point:
P.O.Box 42451
City:
Lafayette
Administrative area:
Louisiana
Postal code:
70504
Country:
USA
Electronic mail address:
klerks@louisiana.edu
Role:
Role code:
pointOfContact
Descriptive keywords:
Keywords:
Keyword:
petroleum hydrocarbons
Keyword:
biodegradation
Keyword:
fate and distribution
Keyword:
mesocosms
Keyword:
bioturbation
Keyword:
pyrene
Keyword:
PAHs
Type:
Keyword type code:
theme
Descriptive keywords:
Keywords:
Keyword:
inapplicable
Type:
Keyword type code:
place
Resource constraints: title: Cite As
Constraints:
Use limitation:
Klerks, Paul. 2017. Mesocosm experiment with single PAH - experimental design, mesocosm water and sediment
environmental data, bioturbator data. Distributed by: Gulf of Mexico Research Initiative Information and
Data Cooperative (GRIIDC), Harte Research Institute, Texas A&M University–Corpus Christi.
doi:10.7266/N7W093WS
Resource constraints: title: CC0 License
Legal constraints:
Use constraints:
Restriction code:
licenceUnrestricted
Other constraints:
This information is released under the Creative Commons license - No Rights Reserved - CC0 1.0 Universal
(https://creativecommons.org/publicdomain/zero/1.0/). The person who associated a work with this deed
has dedicated the work to the public domain by waiving all of his or her rights to the work worldwide
under copyright law, including all related and neighboring rights, to the extent allowed by law. You can
copy, modify, distribute and perform the work, even for commercial purposes, all without asking
permission.
Resource constraints: title: Liability and Warranty
Legal constraints:
Other constraints:
All materials on this website are made available to GRIIDC and in turn to you "as-is." Content may only be
submitted by an individual who represents and warrants that s/he has sufficient rights to be able to
make the content available under a CC0 waiver. There is no warranty (expressed or implied) to these
materials, their title, accuracy, non-infringement of third party rights, or fitness for any particular
purpose, including the performance or results you may obtain from their use. Use these materials at your
own risk. Under no circumstances shall GRIIDC be liable for any direct, incidental, special,
consequential, indirect, or punitive damages that result from the use or the inability to use either
this website or the materials available via this website. If you are dissatisfied with any website
feature, content, or terms of use, your sole and exclusive remedy is to discontinue use.
Aggregation Info:
AggregateInformation:
Aggregate Data Set Name: title: Related Publication Citation
Citation:
Title:
Klerks, P. L., Kascak, A., Cazan, A. M., Deb Adhikary, N., Chistoserdov, A., Shaik, A., … Louka, F. R.
(2018). Effects of the Razor Clam Tagelus plebeius on the Fate of Petroleum Hydrocarbons: A Mesocosm
Experiment. Archives of Environmental Contamination and Toxicology, 75(2), 306–315.
doi:10.1007/s00244-018-0515-0
Date:
inapplicable
Aggregate Data Set Identifier: title: Related Publication DOI
Identifier:
Code:
Anchor: xlink: https://dx.doi.org/10.1007/s00244-018-0515-0 title: DOI
doi:10.1007/s00244-018-0515-0
Association Type:
Association type code:
crossReference
Aggregation Info:
AggregateInformation:
Aggregate Data Set Name: title: Related Publication Citation
Citation:
Title:
Klerks, P. L., Kascak, A., Cazan, A. M., Franco, M. E., & Louka, F. R. (2020). A Mesocosm Assessment
of the Effect of Bioturbation by the Ghost Shrimp (
Lepidophthalmus louisianensis
) on the Fate of Petroleum Hydrocarbons in the Intertidal Zone. Environmental Toxicology and Chemistry, 39(3), 637–647. doi:10.1002/etc.4652
Date:
inapplicable
Aggregate Data Set Identifier: title: Related Publication DOI
Identifier:
Code:
Anchor: xlink: https://dx.doi.org/10.1002/etc.4652 title: DOI
doi:10.1002/etc.4652
Association Type:
Association type code:
crossReference
Language:
eng; USA
Topic category:
Topic category code:
oceans
Topic category:
Topic category code:
biota
Topic category:
Topic category code:
environment
Extent:
Extent:
Description:
Dataset contains laboratory measurements. Field sampling is limited to collection of sediment and test
species. Clams and associated sediment were collected 9/27/14 from Choctoawhachee Bay, FL (30.38854 N,
-86.17429 W). Shrimp and associated sediments were collected 10/26/14 from Bay St. Louis, MS (30.25658
N, -89.41510 W).
Supplemental Information:
Experimental design worksheet includes details on when the experiment was conducted, when sampling was
conducted (for environmental variables and petroleum hydrocarbons) and what tanks received which of 4
treatments (bioturbator present/absent * pyrene added or not). Bioturbator worksheet has info on bioturbator
identity/source/experimental density, recap of treatment assignments to specific tanks, and listing of the
number of bioturbators recovered at the end of the experiment. Clam size (cm) and % survival are also
included. Turbidity worksheet has turbidity results (in NTU) by observation day and tank. Redox worksheet
has redox measurement results (in mV), 3 replicate measurements and mean, by observation day and tank. D.O.
worksheet has ODO measurement results (in % saturation and mg/L D.O.) and probe-adjusted data (since
measurements were conducted with separate probes, in clean tanks and pyrene-dosed tanks, to avoid
cross-contamination). The same worksheet has daily results from measurements on a single sample using both
probes - for establishing probe corrections). ODO measurements are listed by observation day and tank.
Temperature worksheet has measurements for water temperature (in *C; duplicate measurements and means),
measurements for sediment temperature (in *C; duplicate measurements and means), the difference in
temperature between water and sediment of the same tank (Delta T in °C), and the absolute temperature
difference (Delta T abs in °C). Temperature data are listed by observation day and tank. |Water samples of
approximately 30 mL were collected from the tanks (at approximately mid-depth of the water column) using a
turkey baster and placed in 30-mL glass tubes for transport to the lab. In the lab, water samples were
transferred to glass tubes and turbidity quantified on a Hach 2100A turbidimeter, calibrated daily with
GELEX® secondary turbidity standards. Turbidity was expressed in nephelometric turbidity units (NTU). Redox
measurements were obtained with a custom made redox electrode with a platinum indicator electrode exposed at
the end of a thin rigid shaft and a Corning calomel reference probe, using a portable pH/volt meter (Cole
Parmer Digi-Sense® pH/mV/Temp). The bottom half of the reference electrode was placed in the water column,
while the indicator electrode was pushed into the sediment such that its exposed platinum end was at
mid-depth of the sediment. Mid-depth values were determined at 3 locations in each tank. Redox readings were
allowed to stabilize (“stable” if no change within 5 seconds) prior to recording a redox value. Dissolved
oxygen (D.O.) measurements were obtained with the YSI ProODO meter. Optical D.O. readings were taken at the
middle of the water column depth in each tank, and D.O. recorded in “% saturation” and “mg/L O2”. Different
probes were used for clean tanks and tanks to which petroleum hydrocarbons were added. The correct for
differences between the probes, measurements were taken with both probes on a single water sample each day
that water quality measurements were done. Probe-adjusted ODO values were calculated on the basis of the
average differences between the two probes for these water samples. Temperature measurements were obtained
with a Fisher Scientific NiCr/NiAl T/C type K probe (0.1 °C resolution) with the Traceable® type K meter. On
each tank, two measurements were taken in the middle of the water column and two measurements were taken at
mid-depth of the sediment. Different probes were used for clean tanks and those to which petroleum
hydrocarbons were added. Since the goal was to quantify differences between the sediment and the water
column within tanks (obtained with the same probe), no corrections were needed for between-probe
differences.|Instrumentation information is provided in the methods section.|The experiment lasted 10 days.
Environmental samples were taken on 6 days during the 10-day period; 3 samples during mornings and 3 samples
during afternoons (in order to capture some of the within-day variability).|Instruments were calibrated
prior to use. Data entry into digital files was duplicated.|Dataset R2.x226.000:0003 will contain the
results from the hydrocarbon analyses of the sediment and water samples from these experiments.
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Distribution info:
Distribution:
Distributor:
Distributor:
Distributor contact:
Responsible party:
Organisation name:
Gulf of Mexico Research Initiative Information and Data Cooperative (GRIIDC)
Contact info:
Contact:
Phone:
Telephone:
Voice:
3618253604
Address:
Address:
Delivery point:
6300 Ocean Drive
City:
Corpus Christi
Administrative area:
TX
Postal code:
78412
Country:
USA
Electronic mail address:
griidc@gomri.org
Online Resource:
Online Resource:
Linkage:
URL:
https://data.gulfresearchinitiative.org
Role:
Role code:
distributor
Distributor format:
Format:
Name:
xlsx
Version:
inapplicable
File decompression technique:
zip
Distributor transfer options:
Digital transfer options:
Transfer size:
0.1388
Online:
Online Resource:
Linkage:
URL:
https://data.gulfresearchinitiative.org/data/R2.x226.000:0001
Protocol:
https
Name:
Data Landing Page
Description:
GRIIDC dataset landing page
Function:
Online function code:
information
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Metadata maintenance:
Maintenance information:
Maintenance and update frequency:
unknown
Maintenance note:
This ISO metadata record was automatically generated from information provided to GRIIDC for dataset:
R2.x226.000:0001 on 2021-11-29T15:08:20-06:00
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